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<div class="moz-forward-container">Begin forwarded message:
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<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">From: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class="">"iPlant Collaborative" <<a
moz-do-not-send="true"
href="mailto:webinars@iplantcollaborative.org" class="">webinars@iplantcollaborative.org</a>>
<br class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">To: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class="">"Lisa Martin" <<a
moz-do-not-send="true"
href="mailto:lisa@garnetcommunity.org.uk" class="">lisa@garnetcommunity.org.uk</a>><br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
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sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">Reply-To: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class=""><a moz-do-not-send="true"
href="mailto:webinars@iplantcollaborative.org" class="">webinars@iplantcollaborative.org</a><br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">Date: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class="">9 April 2015 10:00:22 BST<br
class="">
</span></div>
<div style="margin-top: 0px; margin-right: 0px; margin-bottom:
0px; margin-left: 0px;" class=""><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif; color:rgba(0, 0, 0, 1.0);" class=""><b
class="">Subject: </b></span><span style="font-family:
-webkit-system-font, Helvetica Neue, Helvetica,
sans-serif;" class=""><b class="">Free Bioinformatics
Resources for Plants, Animals, Microbes - iPlant
Workshop at TGAC</b><br class="">
</span></div>
<br class="">
<div class="">
<table class="bg1" style="background-color: rgb(206, 224,
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<td class="header" align="left"><a
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class=""><img moz-do-not-send="true"
src="http://i4.cmail1.com/ei/r/D2/350/178/064216/headerimage.jpg"
alt="iPlant Collaborative"
style="border: none; margin-bottom:
20px;" class=""></a></td>
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<td class="body" style="padding: 0px 20px 6px;
background-color: rgb(255, 255, 255);"
valign="top">
<table class="" border="0" cellpadding="3"
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<td class="mainbar" align="center"
bgcolor="#f0fafa" valign="top">
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><strong
class="">Hands-on Workshop:</strong></h2>
<h1 style="font-size: 1.6em;
font-weight: bold; color: rgb(0,
151, 169); margin: 3px 0px 5px;
padding: 0px; text-decoration:
none;" class=""><font class=""
color="#0097a9"><em class="">iPlant</em><span
class="Apple-converted-space"> </span>Tools
and Services</font></h1>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><font class=""
color="#76aa41">Fast and Free
Data Storage, Computation, and
Bioinformatics Resources<br
class="">
for Plant and Animal Genomics
and Life Science Data</font></p>
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><strong
class="">The Genome Analysis
Centre (TGAC), UK<br class="">
<br class="">
July 2–3, 2015</strong></h2>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><a
moz-do-not-send="true"
href="http://dolandnalearningcenter.cmail1.com/t/r-l-qkiuijd-iuauhlhui-y/"
style="font-weight: normal;
color: rgb(12, 116, 132);
margin: 0px 0px 5px;
text-decoration: none;" class=""><strong
class="">REGISTER</strong></a><span
class="Apple-converted-space"> </span>for
workshop</p>
</td>
</tr>
<tr class="">
<td class=""><br>
</td>
</tr>
<tr class="">
<td class="mainbar" colspan="2"
align="center" valign="top">
<div style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""> <br
class="webkit-block-placeholder">
</div>
<img moz-do-not-send="true"
src="http://i5.cmail1.com/ei/r/D2/350/178/064216/montage.jpg"
alt="Genomics in Education"
style="padding: 0px 0.5em 0px 0px;
margin: 0px;" class=""
align="left" height="224"
width="321">
<p class="big" style="font-size:
0.8em; font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" align="left">This 2-day
workshop provides a comprehensive
look at platforms, tools, and
services for large-scale data
analysis provided by the<span
class="Apple-converted-space"> </span><em
class="">iPlant Collaborative</em>,
a cyberinfrastructure project of
the National Science Foundation.
Workshop topics build
progressively to cater to the
needs of general and advanced
audiences. Through several
hands-on demos and guided
exercises, workshop participants
will get a comprehensive look at<span
class="Apple-converted-space"> </span><em
class="">iPlant</em>'s tools and
services for large-scale data
analysis. Use cases will draw on
topics in RNA-Seq, genome
annotation, and more.</p>
<p class="big" style="font-size:
0.8em; font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" align="left">Participants
will get hands-on experience with
the following<span
class="Apple-converted-space"> </span><em
class="">iPlant</em><span
class="Apple-converted-space"> </span>cyberinfrastructure:</p>
<h3 style="font-size: 0.95em;
font-weight: normal; margin: 5px
0px; padding: 0px;
text-decoration: none;
line-height: 1.5em;" class=""
align="left"><font class=""
color="#76aa41"><em class="">Discovery
Environment</em></font></h3>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class="" align="left">Simple
web portal for managing data,
analyses, and workflows. Complex
bioinformatics applications can be
run without knowing command line
programming; users can also
integrate their own tools.</p>
<h3 style="font-size: 0.95em;
font-weight: normal; margin: 5px
0px; padding: 0px;
text-decoration: none;
line-height: 1.5em;" class=""
align="left"><font class=""
color="#76aa41"><em class="">Data
Store</em></font></h3>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class="" align="left">Scalable,
secure, and reliable storage for
terabyte-scale data.</p>
<h3 style="font-size: 0.95em;
font-weight: normal; margin: 5px
0px; padding: 0px;
text-decoration: none;
line-height: 1.5em;" class=""
align="left"><font class=""
color="#76aa41"><em class="">Atmosphere</em></font></h3>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class="" align="left">One-click,
on-demand cloud computing.<br
class="">
</p>
</td>
</tr>
<tr class="">
<td class="mainbar" colspan="2"
style="border-top-width: 4px;
border-top-style: solid;
border-top-color: rgb(118, 170,
65);" align="left" valign="top">
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><font
class="" color="#76aa41"><strong
class="">What Data Can I
Bring?<span
class="Apple-converted-space"> </span></strong></font></h2>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><strong class="">Animals,
Plants, and Microbes</strong><span
class="Apple-converted-space"> </span>all
have communities within<span
class="Apple-converted-space"> </span><em
class="">iPlan</em>t.<span
class="Apple-converted-space"> </span><em
class="">iPlant</em><span
class="Apple-converted-space"> </span>also
supports tools for phenotypes
(images, geospatial, and other
trait data), so bring your data to
the workshop and we will show you
what is possible.</p>
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><font
class="" color="#76aa41"><strong
class="">Who Should Attend?</strong></font></h2>
<p class="small" style="font-size:
0.8em; font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" align="left">Any
investigator (PIs, post-docs, grad
students, industry users) who is
or will be working with large
datasets and computation-intensive
research questions in the life
sciences (plants and animals!).</p>
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><font
class="" color="#76aa41"><strong
class="">What Will We Do at
the Workshop?</strong></font></h2>
<p class="small" style="font-size:
0.8em; font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" align="left">We will
cover a variety of hands-on
computer demos designed to
familiarize you will the major
tools and resources available to
you.<strong class=""><span
class="Apple-converted-space"> </span>Day
one</strong><span
class="Apple-converted-space"> </span>starts
with an introduction to<span
class="Apple-converted-space"> </span><em
class="">iPlant</em>’s tools to
manage, analyse, and share data –
then these resources are applied
to structured use cases such as
analysing differential gene
expression in an RNA-Seq dataset,
association studies, image data,
and more.<span
class="Apple-converted-space"> </span><strong
class="">Day two</strong><span
class="Apple-converted-space"> </span>covers
some more advanced research use
cases and can be customized
according to participant
interests. We will also help you
get started using<em class=""><span
class="Apple-converted-space"> </span>iPlant</em><span
class="Apple-converted-space"> </span>with
your own data. All tools are
freely accessible with an<span
class="Apple-converted-space"> </span><em
class="">iPlant</em><span
class="Apple-converted-space"> </span>account.</p>
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><font
class="" color="#76aa41"><strong
class="">Agenda:<span
class="Apple-converted-space"> </span></strong>Tentative
Topics (subject to participant
interest)</font></h2>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><strong class="">Day
One</strong></p>
<ul style="text-align: left;"
class="">
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Introduction
to<span
class="Apple-converted-space"> </span><em
class="">iPlant</em><span
class="Apple-converted-space"> </span>Discovery
Environment</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Importing
Data and Collaborating with the<span
class="Apple-converted-space"> </span><em
class="">iPlant</em><span
class="Apple-converted-space"> </span>Data
Store</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Setting
up an Analysis Pipeline in the
DE</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Examining
Differential Expression in an
RNA-Seq Dataset</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Introduction
to Atmosphere Cloud Computing</li>
</ul>
<p style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><strong class="">Day
Two</strong></p>
<ul style="text-align: left;"
class="">
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Visualization
of RNA-Seq Data with R in
Atmosphere</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Tools
for Association Analysis – GWAS
Pipeline</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Tools
and Tool Integration – Advanced
Phylogenetics</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Genome
Assembly with ALLPATHS</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Genome
Annotation – MAKER</li>
<li style="font-weight: normal;
font-size: 0.8em; color: rgb(51,
51, 51); margin: 0px 0px 5px;
text-decoration: none;" class="">Getting
Started with<span
class="Apple-converted-space"> </span><em
class="">iPlant<span
class="Apple-converted-space"> </span></em>Science
APIs</li>
</ul>
<div style="font-size: 0.8em;
font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" class=""><br
class="webkit-block-placeholder">
</div>
<h2 style="font-size: 1em;
font-weight: normal; color:
rgb(118, 170, 65); margin: 5px 0px
10px; padding: 0px;" class=""><font
class="" color="#76aa41"><strong
class="">What Should I Bring?</strong></font></h2>
<p class="small" style="font-size:
0.8em; font-weight: normal; color:
rgb(51, 51, 51); margin: 5px 0px
12px; padding: 0px; line-height:
1.45em;" align="left">This
workshop is hands-on so please
bring a Wi-Fi enabled laptop.</p>
<h3 style="font-size: 0.95em;
font-weight: normal; margin: 5px
0px; padding: 0px;
text-decoration: none;
line-height: 1.5em;" class=""><strong
class="">Participation fee is
£60 and includes all coffee
breaks and lunch.</strong><span
class="Apple-converted-space"> </span>Registration
is on a first-come, first-served
basis with limited places
available. Participants are
responsible for their own
travel/accommodation costs for
this workshop.</h3>
</td>
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<h1 style="font-size: 1.6em;
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padding: 0px; text-decoration:
none; text-align: center;"
class=""><font class=""
color="#da6626"><a
moz-do-not-send="true"
href="http://dolandnalearningcenter.cmail1.com/t/r-l-qkiuijd-iuauhlhui-j/"
style="text-decoration: none;"
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<div style="font-size: 0.75em; font-weight:
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line-height: 1.5em; margin: 0px; padding:
0px;" class=""><font class=""
color="#999999">The<span
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class="">iPlant Collaborative</em><span
class="Apple-converted-space"> </span>creates
cyberinfrastructure for life science
researchers and educators,<span
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enabling them to understand and make
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biological systems.</font></div>
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